2WVJ Transferase date Oct 17, 2009
title Mutation Of Thr163 To Ser In Human Thymidine Kinase Shifts T Specificity From Thymidine Towards The Nucleoside Analogue Azidothymidine
authors T.Skovgaard, U.Uhlin, B.Munch-Petersen
compound source
Molecule: Thymidine Kinase, Cytosolic
Chain: A, B, C, D, E, F, G, H
Fragment: Residues 1-193
Synonym: Thymidine Kinase 1
Ec: 2.7.1.21
Engineered: Yes
Mutation: Yes
Other_details: Ttp Feedback Inhibitor
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-2thutk1-Cdelta41
symmetry Space Group: C 1 2 1
R_factor 0.173 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
156.902 123.252 121.024 90.00 132.98 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand MG, TTP, ZN enzyme Transferase E.C.2.7.1.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceComparative active-site mutation study of human and Caenorhabditis elegans thymidine kinase 1., Skovgaard T, Uhlin U, Munch-Petersen B, FEBS J. 2012 May;279(10):1777-87. doi: 10.1111/j.1742-4658.2012.08554.x. Epub, 2012 Mar 21. PMID:22385435
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (237 Kb) [Save to disk]
  • Biological Unit Coordinates (2wvj.pdb1.gz) 116 Kb
  • Biological Unit Coordinates (2wvj.pdb2.gz) 117 Kb
  • LPC: Ligand-Protein Contacts for 2WVJ
  • CSU: Contacts of Structural Units for 2WVJ
  • Structure Factors (2335 Kb)
  • Retrieve 2WVJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WVJ from S2C, [Save to disk]
  • Re-refined 2wvj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WVJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WVJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2WVJ, from MSDmotif at EBI
  • Fold representative 2wvj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wvj_B] [2wvj] [2wvj_G] [2wvj_E] [2wvj_D] [2wvj_A] [2wvj_C] [2wvj_H] [2wvj_F]
  • SWISS-PROT database: [P04183]
  • Domain organization of [KITH_HUMAN] by SWISSPFAM
  • Other resources with information on 2WVJ
  • Community annotation for 2WVJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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