2WYA Transferase date Nov 13, 2009
title Crystal Structure Of Human Mitochondrial 3-Hydroxy-3- Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
authors W.W.Yue, N.Shafqat, P.Savitsky, A.K.Roos, C.Cooper, J.W.Murray, F.Von Delft, C.Arrowsmith, M.Wikstrom, A.Edwards, C.Bountra, U.Oppermann
compound source
Molecule: Hydroxymethylglutaryl-Coa Synthase, Mitochondrial;
Chain: A, B, C, D
Fragment: Residues 51-508
Synonym: Hmg-Coa Synthase, 3-Hydroxy-3-Methylglutaryl Coenzyme A Synthase;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organelle: Mitochondria
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: R3-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnh-Trxt
symmetry Space Group: P 1
R_factor 0.1614 R_Free 0.1840
length a length b length c angle alpha angle beta angle gamma
66.410 83.514 101.442 100.00 108.08 96.30
method X-Ray Diffractionresolution 1.70 Å
ligand GOL, HMG enzyme Transferase E.C. BRENDA
note 2WYA supersedes 2V4W
A, D, C, B

Primary referenceCrystal Structures of Human HMG-CoA Synthase Isoforms Provide Insights into Inherited Ketogenesis Disorders and Inhibitor Design., Shafqat N, Turnbull A, Zschocke J, Oppermann U, Yue WW, J Mol Biol. 2010 Mar 25. PMID:20346956
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (628 Kb) [Save to disk]
  • Biological Unit Coordinates (2wya.pdb1.gz) 312 Kb
  • Biological Unit Coordinates (2wya.pdb2.gz) 311 Kb
  • LPC: Ligand-Protein Contacts for 2WYA
  • CSU: Contacts of Structural Units for 2WYA
  • Structure Factors (10444 Kb)
  • Retrieve 2WYA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WYA from S2C, [Save to disk]
  • Re-refined 2wya structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WYA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WYA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2WYA, from MSDmotif at EBI
  • Fold representative 2wya from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wya_B] [2wya_A] [2wya_C] [2wya_D] [2wya]
  • SWISS-PROT database: [P54868]
  • Domain organization of [HMCS2_HUMAN] by SWISSPFAM
  • Other resources with information on 2WYA
  • Community annotation for 2WYA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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