2X8A Nuclear Protein date Mar 08, 2010
title Human Nuclear Valosin Containing Protein Like (Nvl), C- Terminal Aaa-Atpase Domain
authors M.Moche, P.Schuetz, C.H.Arrowsmith, H.Berglund, C.Bountra, R.Collins, A.M.Edwards, S.Flodin, A.Flores, S.Graslund, M.Hammarstrom, I.Johansson, A.Kallas, T.Karlberg, T.Kotenyova, P.Kraulis, P.Nordlund, T.Nyman, C.Persson, A.Sehic, M.I.Siponen, L.Svensson, A.G.Thorsell, L.Tresaugues, S.Vandenberg, E.Wahlberg, J.Weigelt, M.Welin, M.Wisniewska, H.Schuler
compound source
Molecule: Nuclear Valosin-Containing Protein-Like
Chain: A
Fragment: C-Terminal Aaa-Atpase Domain, 574-845
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) Gold Prare2
Expression_system_plasmid: Pnic-Bsa4
Other_details: Mammalian Gene Collection (Mgc)
symmetry Space Group: P 61
R_factor 0.2105 R_Free 0.2503
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.989 77.989 86.038 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
ligand PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (2x8a.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 2X8A
  • CSU: Contacts of Structural Units for 2X8A
  • Structure Factors (113 Kb)
  • Retrieve 2X8A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2X8A from S2C, [Save to disk]
  • Re-refined 2x8a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2X8A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2X8A
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2X8A, from MSDmotif at EBI
  • Fold representative 2x8a from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2x8a_A] [2x8a]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2X8A: [AAA ] by SMART
  • Other resources with information on 2X8A
  • Community annotation for 2X8A at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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