2Y1X Transferase date Dec 10, 2010
title Crystal Structure Of Coactivator Associated Arginine Methyltransferase 1 (Carm1) In Complex With Sinefungin And Inhibitor
authors J.S.Sack, S.Thieffine, T.Bandiera, M.Fasolini, G.J.Duke, L.Jayara K.F.Kish, H.E.Klei, A.V.Purandare, P.Rosettani, S.Troiani, D.Xie J.A.Bertrand
compound source
Molecule: Histone-Arginine Methyltransferase Carm1
Chain: A, B, C, D
Fragment: Catalytic Domain, Residues 135-482
Synonym: Carm1, Coactivator-Associated Arginine Methyltrans 1, Protein Arginine N-Methyltransferase 4;
Ec: 2.1.1.125
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Mm294(De3)
symmetry Space Group: P 21 21 2
R_factor 0.207 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.558 98.757 207.456 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand 845, CL, SAH BindingDB enzyme Transferase E.C.2.1.1.125 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural basis for CARM1 inhibition by indole and pyrazole inhibitors., Sack JS, Thieffine S, Bandiera T, Fasolini M, Duke GJ, Jayaraman L, Kish KF, Klei HE, Purandare AV, Rosettani P, Troiani S, Xie D, Bertrand JA, Biochem J. 2011 Jun 1;436(2):331-9. PMID:21410432
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (240 Kb) [Save to disk]
  • Biological Unit Coordinates (2y1x.pdb1.gz) 118 Kb
  • Biological Unit Coordinates (2y1x.pdb2.gz) 121 Kb
  • LPC: Ligand-Protein Contacts for 2Y1X
  • CSU: Contacts of Structural Units for 2Y1X
  • Structure Factors (478 Kb)
  • Retrieve 2Y1X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Y1X from S2C, [Save to disk]
  • Re-refined 2y1x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Y1X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Y1X
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2Y1X, from MSDmotif at EBI
  • Fold representative 2y1x from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2y1x_B] [2y1x_D] [2y1x_A] [2y1x_C] [2y1x]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2Y1X
  • Community annotation for 2Y1X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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