2Y73 Oxidoreductase date Jan 28, 2011
title The Native Structures Of Soluble Human Primary Amine Oxidase
authors H.Elovaara, H.Kidron, V.Parkash, Y.Nymalm, E.Bligt, P.Ollikka, D.J M.Pihlavisto, M.Salmi, S.Jalkanen, T.A.Salminen
compound source
Molecule: Membrane Primary Amine Oxidase
Chain: A, B
Synonym: Amine Oxidase Copper Containing 3, Copper Amine Ox Hpao, Semicarbazide-Sensitive Amine Oxidase, Ssao, Vascular Protein 1, Vap-1;
Ec: 1.4.3.21
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 65 2 2
R_factor 0.175 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
225.755 225.755 216.985 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
ligand CA, CU, FMT, IMD, MAN, NAG, TPQ enzyme Oxidoreductase E.C.1.4.3.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceIdentification of Two Imidazole Binding Sites and Key Residues for Substrate Specificity in Human Primary Amine Oxidase AOC3., Elovaara H, Kidron H, Parkash V, Nymalm Y, Bligt E, Ollikka P, Smith DJ, Pihlavisto M, Salmi M, Jalkanen S, Salminen TA, Biochemistry. 2011 Jun 21;50(24):5507-20. Epub 2011 May 27. PMID:21585208
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (241 Kb) [Save to disk]
  • Biological Unit Coordinates (2y73.pdb1.gz) 232 Kb
  • LPC: Ligand-Protein Contacts for 2Y73
  • CSU: Contacts of Structural Units for 2Y73
  • Structure Factors (1428 Kb)
  • Retrieve 2Y73 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Y73 from S2C, [Save to disk]
  • Re-refined 2y73 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Y73 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Y73
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2Y73, from MSDmotif at EBI
  • Fold representative 2y73 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2y73_A] [2y73] [2y73_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2Y73
  • Community annotation for 2Y73 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science