2Y74 Oxidoreductase date Jan 28, 2011
title The Crystal Structure Of Human Soluble Primary Amine Oxidase The Off-Copper Conformation
authors H.Elovaara, H.Kidron, V.Parkash, Y.Nymalm, E.Bligt, P.Ollikka, D.J M.Pihlavisto, M.Salmi, S.Jalkanen, T.A.Salminen
compound source
Molecule: Membrane Primary Amine Oxidase
Chain: A, B
Synonym: Human Primary Amine Oxidase Aoc3, Amine Oxidase Co Containing 3, Copper Amine Oxidase, Hpao, Semicarbazide-Sen Amine Oxidase, Ssao, Semicarbazide-Sensitive Amine Oxidase, Adhesion Protein 1, Vap-1;
Ec: 1.4.3.6
Other_details: In The Active Site, Tyr471 Is Post Translati Modified.
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Blood
symmetry Space Group: P 65 2 2
R_factor 0.179 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
225.800 225.800 218.700 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.95 Å
ligand CA, CU, IMD, MAN, NAG, T0I enzyme Oxidoreductase E.C.1.4.3.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceIdentification of Two Imidazole Binding Sites and Key Residues for Substrate Specificity in Human Primary Amine Oxidase AOC3., Elovaara H, Kidron H, Parkash V, Nymalm Y, Bligt E, Ollikka P, Smith DJ, Pihlavisto M, Salmi M, Jalkanen S, Salminen TA, Biochemistry. 2011 Jun 21;50(24):5507-20. Epub 2011 May 27. PMID:21585208
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (236 Kb) [Save to disk]
  • Biological Unit Coordinates (2y74.pdb1.gz) 227 Kb
  • LPC: Ligand-Protein Contacts for 2Y74
  • CSU: Contacts of Structural Units for 2Y74
  • Structure Factors (576 Kb)
  • Retrieve 2Y74 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Y74 from S2C, [Save to disk]
  • Re-refined 2y74 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Y74 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Y74
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2Y74, from MSDmotif at EBI
  • Fold representative 2y74 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2y74_A] [2y74_B] [2y74]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2Y74
  • Community annotation for 2Y74 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
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