2YBS date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand GOL, M3L, NI, S2G, ZN BindingDB enzyme
Primary referenceThe oncometabolite 2-hydroxyglutarate inhibits histone lysine demethylases., Chowdhury R, Yeoh KK, Tian YM, Hillringhaus L, Bagg EA, Rose NR, Leung IK, Li XS, Woon EC, Yang M, McDonough MA, King ON, Clifton IJ, Klose RJ, Claridge TD, Ratcliffe PJ, Schofield CJ, Kawamura A, EMBO Rep. 2011 May 1;12(5):463-9. Epub 2011 Apr 1. PMID:21460794
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (134 Kb) [Save to disk]
  • Biological Unit Coordinates (2ybs.pdb1.gz) 65 Kb
  • Biological Unit Coordinates (2ybs.pdb2.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 2YBS
  • CSU: Contacts of Structural Units for 2YBS
  • Structure Factors (548 Kb)
  • Retrieve 2YBS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YBS from S2C, [Save to disk]
  • Re-refined 2ybs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2YBS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ybs] [2ybs_A] [2ybs_B] [2ybs_C] [2ybs_D]
  • SWISS-PROT database:
  • Domains found in 2YBS: [JmjC] [JmjN ] by SMART

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