OCA Atlas for 2YBU

2YBU

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

CX9, GOL

enzyme

Gene
Ontology

Chain	Function	Process	Component
C, A, B, E, D, F

Primary reference

Analyzing Airway Inflammation with Chemical Biology: Dissection of Acidic Mammalian Chitinase Function with a Selective Drug-like Inhibitor., Sutherland TE, Andersen OA, Betou M, Eggleston IM, Maizels RM, van Aalten D, Allen JE, Chem Biol. 2011 May 27;18(5):569-79. PMID:21609838

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (389 Kb) [Save to disk]

Biological Unit Coordinates (2ybu.pdb1.gz) 69 Kb

Biological Unit Coordinates (2ybu.pdb2.gz) 70 Kb

Biological Unit Coordinates (2ybu.pdb3.gz) 69 Kb

Biological Unit Coordinates (2ybu.pdb4.gz) 68 Kb

Biological Unit Coordinates (2ybu.pdb5.gz) 69 Kb

Biological Unit Coordinates (2ybu.pdb6.gz) 68 Kb

LPC: Ligand-Protein Contacts for 2YBU

CSU: Contacts of Structural Units for 2YBU

Structure Factors (1176 Kb)

Retrieve 2YBU in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2YBU from S2C, [Save to disk]

Re-refined 2ybu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2YBU in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ybu] [2ybu_A] [2ybu_B] [2ybu_C] [2ybu_D] [2ybu_E] [2ybu_F]

SWISS-PROT database:

Domain found in 2YBU: [Glyco_18 ] by SMART

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