2YGI date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CU, HM7, HM8 enzyme
Primary referenceVariations in methanobactin structure influences copper utilization by methane-oxidizing bacteria., El Ghazouani A, Basle A, Gray J, Graham DW, Firbank SJ, Dennison C, Proc Natl Acad Sci U S A. 2012 May 29;109(22):8400-4. Epub 2012 May 10. PMID:22582172
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (15 Kb) [Save to disk]
  • Biological Unit Coordinates (2ygi.pdb1.gz) 3 Kb
  • Biological Unit Coordinates (2ygi.pdb2.gz) 3 Kb
  • Biological Unit Coordinates (2ygi.pdb3.gz) 3 Kb
  • Biological Unit Coordinates (2ygi.pdb4.gz) 3 Kb
  • LPC: Ligand-Protein Contacts for 2YGI
  • CSU: Contacts of Structural Units for 2YGI
  • Structure Factors (124 Kb)
  • Retrieve 2YGI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YGI from S2C, [Save to disk]
  • Re-refined 2ygi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2YGI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ygi] [2ygi_A] [2ygi_B] [2ygi_C] [2ygi_D]
  • SWISS-PROT database:

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