2YL2 Ligase date May 31, 2011
title Crystal Structure Of Human Acetyl-Coa Carboxylase 1, Biotin Carboxylase (Bc) Domain
authors J.R.C.Muniz, D.S.Froese, E.Krysztofinska, M.Vollmar, A.Beltrami, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, J.Weigelt, C.Bountra, U.Oppermann
compound source
Molecule: Acetyl-Coa Carboxylase 1
Chain: A, B
Fragment: Biotin Carboxylase (Bc) Domain, Residues 78-617
Synonym: Acc1, Acc-Alpha, Biotin Carboxylase
Ec: 6.4.1.2, 6.3.4.14
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: R3-Pl
Expression_system_vector_type: Plasmid
Expression_system_vector: Pnic28-Bsa4
symmetry Space Group: P 1
R_factor 0.206 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.670 60.870 70.370 92.04 98.00 92.20
method X-Ray Diffractionresolution 2.30 Å
ligand
enzyme Ligase E.C.6.4.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (159 Kb) [Save to disk]
  • Biological Unit Coordinates (2yl2.pdb1.gz) 77 Kb
  • Biological Unit Coordinates (2yl2.pdb2.gz) 79 Kb
  • CSU: Contacts of Structural Units for 2YL2
  • Structure Factors (2156 Kb)
  • Retrieve 2YL2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YL2 from S2C, [Save to disk]
  • Re-refined 2yl2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2YL2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2YL2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2YL2, from MSDmotif at EBI
  • Fold representative 2yl2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yl2] [2yl2_A] [2yl2_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2YL2: [Biotin_carb_C ] by SMART
  • Other resources with information on 2YL2
  • Community annotation for 2YL2 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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