2YMK date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand ZN enzyme
note 2YMK (Molecule of the Month:pdb162)
Gene
Ontology
ChainFunctionProcessComponent
C, A, B


Primary referenceCrystal structure and functional mechanism of a human antimicrobial membrane channel., Song C, Weichbrodt C, S Salnikov E, Dynowski M, O Forsberg B, Bechinger B, Steinem C, de Groot BL, Zachariae U, Zeth K, Proc Natl Acad Sci U S A. 2013 Feb 20. PMID:23426625
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (2ymk.pdb1.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 2YMK
  • CSU: Contacts of Structural Units for 2YMK
  • Structure Factors (84 Kb)
  • Retrieve 2YMK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YMK from S2C, [Save to disk]
  • Re-refined 2ymk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2YMK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ymk] [2ymk_A] [2ymk_B] [2ymk_C]
  • SWISS-PROT database:

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