OCA Atlas for 2YPZ

2YPZ

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
G, I, D, H, C, B, J, F, E, A

Primary reference

A Structural Basis for BRD2/4-Mediated Host Chromatin Interaction and Oligomer Assembly of Kaposi Sarcoma-Associated Herpesvirus and Murine Gammaherpesvirus LANA Proteins., Hellert J, Weidner-Glunde M, Krausze J, Richter U, Adler H, Fedorov R, Pietrek M, Ruckert J, Ritter C, Schulz TF, Luhrs T, PLoS Pathog. 2013 Oct;9(10):e1003640. doi: 10.1371/journal.ppat.1003640. Epub, 2013 Oct 17. PMID:24146614

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (462 Kb) [Save to disk]

Biological Unit Coordinates (2ypz.pdb1.gz) 93 Kb

Biological Unit Coordinates (2ypz.pdb2.gz) 92 Kb

Biological Unit Coordinates (2ypz.pdb3.gz) 92 Kb

Biological Unit Coordinates (2ypz.pdb4.gz) 92 Kb

Biological Unit Coordinates (2ypz.pdb5.gz) 92 Kb

CSU: Contacts of Structural Units for 2YPZ

Structure Factors (232 Kb)

Retrieve 2YPZ in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2YPZ from S2C, [Save to disk]

Re-refined 2ypz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2YPZ in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ypz] [2ypz_A] [2ypz_B] [2ypz_C] [2ypz_D] [2ypz_E] [2ypz_F] [2ypz_G] [2ypz_H] [2ypz_I] [2ypz_J]

SWISS-PROT database:

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