2YQM Protein Transport date Mar 30, 2007
title Solution Structure Of The Fyve Domain In Zinc Finger Fyve Do Containing Protein 12
authors F.He, Y.Muto, M.Inoue, T.Kigawa, M.Shirouzu, T.Terada, S.Yokoyama, Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Run And Fyve Domain-Containing Protein 1
Chain: A
Fragment: Fyve Domain, Unp Residues 627-708
Synonym: Fyve-Finger Protein Eip1, Zinc Finger Fyve Domain- Protein 12, La-Binding Protein 1, Rab4-Interacting Protein;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rufy1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P060327-08
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (451 Kb) [Save to disk]
  • Biological Unit Coordinates (2yqm.pdb1.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 2YQM
  • CSU: Contacts of Structural Units for 2YQM
  • Retrieve 2YQM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YQM from S2C, [Save to disk]
    • View 2YQM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2YQM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2YQM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yqm] [2yqm_A]
  • SWISS-PROT database: [Q96T51]
  • Domain organization of [RUFY1_HUMAN] by SWISSPFAM
  • Domain found in 2YQM: [FYVE ] by SMART
    • Other resources with information on 2YQM
  • Community annotation for 2YQM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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