2YUP Cell Adhesion date Apr 06, 2007
title Solution Structure Of The Second Sh3 Domain Of Human Vinexin
authors H.Abe, N.Tochio, K.Miyamoto, K.Saito, A.Sasagawa, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Vinexin
Chain: A
Fragment: Sh3 Domain
Synonym: Sorbin And Sh3 Domain-Containing Protein 3, Sh3- Containing Adapter Molecule 1, Scam-1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sorbs3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050627-09
Other_details: Cell-Free Protein Synthesis
methodSolution NMR

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (464 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2YUP
  • Original NMR restraints for 2YUP from PDB
  • Retrieve 2YUP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YUP from S2C, [Save to disk]
  • View 2YUP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2YUP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2YUP, from MSDmotif at EBI
  • Fold representative 2yup from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yup_A] [2yup]
  • SWISS-PROT database: [O60504]
  • Domain organization of [VINEX_HUMAN] by SWISSPFAM
  • Domain found in 2YUP: [SH3 ] by SMART
  • Other resources with information on 2YUP
  • Community annotation for 2YUP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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