2Z0V Endocytosis date May 07, 2007
title Crystal Structure Of Bar Domain Of Endophilin-III
authors K.Murayama, M.Kato-Murayama, T.Terada, M.Shirouzu, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Sh3-Containing Grb2-Like Protein 3
Chain: A, B
Fragment: Bar Domain
Synonym: Endophilin-III, Endophilin-3, Endophilin-A3, Sh3 Domain Protein 2c, Een-B2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cell-Free Protein Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Px070124-24
symmetry Space Group: P 21 21 2
R_factor 0.242 R_Free 0.322
length a length b length c angle alpha angle beta angle gamma
56.818 194.167 43.713 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.49 Å
ligand MSE enzyme
A, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (2z0v.pdb1.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 2Z0V
  • CSU: Contacts of Structural Units for 2Z0V
  • Likely Quarternary Molecular Structure file(s) for 2Z0V
  • Structure Factors (140 Kb)
  • Retrieve 2Z0V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Z0V from S2C, [Save to disk]
  • Re-refined 2z0v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Z0V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Z0V
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2Z0V, from MSDmotif at EBI
  • Fold representative 2z0v from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2z0v] [2z0v_A] [2z0v_B]
  • SWISS-PROT database: [Q99963]
  • Domain organization of [SH3G3_HUMAN] by SWISSPFAM
  • Domain found in 2Z0V: [BAR ] by SMART
  • Other resources with information on 2Z0V
  • Community annotation for 2Z0V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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