2ZJ4 Transferase date Feb 29, 2008
title Isomerase Domain Of Human Glucose:Fructose-6-Phosphate Amidotransferase
authors Y.Nakaishi, M.Bando, K.Kondo, H.Tsuge
compound source
Molecule: Glucosamine--Fructose-6-Phosphate Aminotransferase [Isomerizing] 1;
Chain: A
Fragment: Sis(Sugar Isomerase) Domains, Unp Residues 332- 699;
Synonym: Glutamine:Fructose 6 Phosphate Amidotransferase 1, Hexosephosphate Aminotransferase 1, D-Fructose-6-Phosphate Amidotransferase 1, Gfat 1, Gfat1;
Ec: 2.6.1.16
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Codon+Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet23
symmetry Space Group: I 41 2 2
R_factor 0.158 R_Free 0.208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.927 78.927 277.323 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand AGP enzyme Transferase E.C.2.6.1.16 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural analysis of human glutamine:fructose-6-phosphate amidotransferase, a key regulator in type 2 diabetes., Nakaishi Y, Bando M, Shimizu H, Watanabe K, Goto F, Tsuge H, Kondo K, Komatsu M, FEBS Lett. 2009 Jan 5;583(1):163-7. Epub 2008 Dec 6. PMID:19059404
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (2zj4.pdb1.gz) 126 Kb
  • LPC: Ligand-Protein Contacts for 2ZJ4
  • CSU: Contacts of Structural Units for 2ZJ4
  • Likely Quarternary Molecular Structure file(s) for 2ZJ4
  • Structure Factors (201 Kb)
  • Retrieve 2ZJ4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZJ4 from S2C, [Save to disk]
  • Re-refined 2zj4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ZJ4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZJ4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2ZJ4, from MSDmotif at EBI
  • Fold representative 2zj4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zj4] [2zj4_A]
  • SWISS-PROT database: [Q06210]
  • Domain organization of [GFPT1_HUMAN] by SWISSPFAM
  • Other resources with information on 2ZJ4
  • Community annotation for 2ZJ4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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