2ZME Protein Transport date Apr 17, 2008
title Integrated Structural And Functional Model Of The Human Escr Complex
authors Y.J.Im, J.H.Hurley
compound source
Molecule: Vacuolar-Sorting Protein Snf8
Chain: A
Synonym: Ell-Associated Protein Of 30 Kda
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Snf8, Eap30
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pst39

Molecule: Vacuolar Protein-Sorting-Associated Protein 36
Chain: B
Fragment: Unp Residues 149-386
Synonym: Ell-Associated Protein Of 45 Kda
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vps36, C13orf9, Eap45
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pst39

Molecule: Vacuolar Protein-Sorting-Associated Protein 25
Chain: C, D
Fragment: Unp Residues 1-102
Synonym: Hvps25, Ell-Associated Protein Of 20 Kda, Dermal P Derived Protein 9;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vps25, Derp9, Eap20
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pst39
symmetry Space Group: P 32 1 2
R_factor 0.214 R_Free 0.313
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.480 81.480 226.244 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.90 Å
Gene
Ontology
ChainFunctionProcessComponent
A


B


D, C


Primary referenceIntegrated structural model and membrane targeting mechanism of the human ESCRT-II complex., Im YJ, Hurley JH, Dev Cell. 2008 Jun;14(6):902-13. PMID:18539118
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (2zme.pdb1.gz) 103 Kb
  • CSU: Contacts of Structural Units for 2ZME
  • Likely Quarternary Molecular Structure file(s) for 2ZME
  • Structure Factors (151 Kb)
  • Retrieve 2ZME in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZME from S2C, [Save to disk]
  • Re-refined 2zme structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ZME in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZME
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2ZME, from MSDmotif at EBI
  • Fold representative 2zme from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zme_A] [2zme_B] [2zme_D] [2zme] [2zme_C]
  • SWISS-PROT database: [Q96H20] [Q9BRG1] [Q86VN1]
  • Domain organization of [SNF8_HUMAN] [VPS25_HUMAN] [VPS36_HUMAN] by SWISSPFAM
  • Other resources with information on 2ZME
  • Community annotation for 2ZME at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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