2ZZS Crystal structure of cytochrome c554 from Vibrio parahaemolyticus strain RIMD2210633 date
authors Akazaki, H., Kawai, F., Kumaki, Y., Sekine, K., Hakamata, W., Nishio, T., Park, S.Y., Oku, T.
compound source
symmetry
R_factor
R_Free 0.24213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand GOL, HEC enzyme
Gene
Ontology
ChainFunctionProcessComponent
S, F, T, N, K, Y, E, 2, V, Z, Q, 1, M, C, L, 6, A, O, J, W, X, 3, P, B, H, 4, D, R, I, G, U, 5


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (456 Kb) [Save to disk]
  • Biological Unit Coordinates (2zzs.pdb1.gz) 22 Kb
  • Biological Unit Coordinates (2zzs.pdb2.gz) 22 Kb
  • Biological Unit Coordinates (2zzs.pdb3.gz) 22 Kb
  • Biological Unit Coordinates (2zzs.pdb4.gz) 21 Kb
  • Biological Unit Coordinates (2zzs.pdb5.gz) 22 Kb
  • Biological Unit Coordinates (2zzs.pdb6.gz) 21 Kb
  • Biological Unit Coordinates (2zzs.pdb7.gz) 21 Kb
  • Biological Unit Coordinates (2zzs.pdb8.gz) 21 Kb
  • Biological Unit Coordinates (2zzs.pdb9.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 2ZZS
  • CSU: Contacts of Structural Units for 2ZZS
  • Structure Factors (3375 Kb)
  • Retrieve 2ZZS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZZS from S2C, [Save to disk]
  • Re-refined 2zzs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2ZZS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2ZZS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ZZS, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zzs_1] [2zzs_L] [2zzs_2] [2zzs_6] [2zzs_W] [2zzs_H] [2zzs_S] [2zzs_N] [2zzs_E] [2zzs_O] [2zzs_4] [2zzs_Y] [2zzs_R] [2zzs_G] [2zzs_F] [2zzs_P] [2zzs_K] [2zzs_U] [2zzs] [2zzs_D] [2zzs_J] [2zzs_X] [2zzs_3] [2zzs_A] [2zzs_B] [2zzs_I] [2zzs_T] [2zzs_V] [2zzs_Z] [2zzs_C] [2zzs_M] [2zzs_Q] [2zzs_5]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2ZZS
  • Community annotation for 2ZZS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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