2GO4	Hydrolase	date	Apr 12, 2006
title	Crystal Structure Of Aquifex Aeolicus Lpxc Complexed With Tu
authors	H.A.Gennadios, D.A.Whittington, X.Li, C.A.Fierke, D.W.Christians
compound		source
Molecule: Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase; Chain: A, B Fragment: Delta 11 C-Terminal Deletion Synonym: Udp-3-O-Acyl-Glcnac Deacetylase Ec: 3.5.1.- Engineered: Yes Mutation: Yes		Organism_scientific: Aquifex Aeolicus Organism_taxid: 63363 Gene: Lpxc, Enva Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21a
symmetry	Space Group: P 61	R_factor 0.210 R_Free 0.241
crystal cell	length a length b length c angle alpha angle beta angle gamma 100.729 100.729 121.299 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	CL, TUX, ZN	enzyme	Hydrolase E.C.3.5.1 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Mechanistic Inferences from the Binding of Ligands to LpxC, a Metal-Dependent Deacetylase(,)., Gennadios HA, Whittington DA, Li X, Fierke CA, Christianson DW, Biochemistry. 2006 Jul 4;45(26):7940-7948. PMID:16800620

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk] Biological Unit Coordinates (2go4.pdb1.gz) 46 Kb Biological Unit Coordinates (2go4.pdb2.gz) 45 Kb Biological Unit Coordinates (2go4.pdb3.gz) 89 Kb LPC: Ligand-Protein Contacts for 2GO4 CSU: Contacts of Structural Units for 2GO4 Likely Quarternary Molecular Structure file(s) for 2GO4 Structure Factors (142 Kb) Retrieve 2GO4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2GO4 from S2C, [Save to disk] Re-refined 2go4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2GO4 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2GO4

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2GO4, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2go4] [2go4_B] [2go4_A] SWISS-PROT database: [O67648] Domain organization of [LPXC_AQUAE] by SWISSPFAM

Other resources with information on 2GO4

Community annotation for 2GO4 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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