3AM7 Translation Protein Binding date Aug 17, 2010
title Crystal Structure Of The Ternary Complex Of Eif4e-M7gtp-4ebp
authors K.Tomoo, A.Fukuyo, Y.In, T.Ishida
compound source
Molecule: Eukaryotic Translation Initiation Factor 4e
Chain: A
Fragment: Unp Residues 27-217
Synonym: Eif-4e, Eif4e, Mrna Cap-Binding Protein, Eif-4f 25 Subunit;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eif4e, Eif4el1, Eif4f
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Eukaryotic Translation Initiation Factor 4e-Bindi 2;
Chain: B
Fragment: Unp Residues 47-65
Synonym: Eif4e-Binding Protein 2, 4e-Bp2
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eif4ebp2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43
R_factor 0.230 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.840 87.840 37.750 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand MGP BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (3am7.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 3AM7
  • CSU: Contacts of Structural Units for 3AM7
  • Structure Factors (135 Kb)
  • Retrieve 3AM7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3AM7 from S2C, [Save to disk]
  • Re-refined 3am7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3AM7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3AM7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3AM7, from MSDmotif at EBI
  • Fold representative 3am7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3am7_B] [3am7_A] [3am7]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3AM7
  • Community annotation for 3AM7 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science