3ASL Ligase Dna Binding Protein date Dec 16, 2010
title Structure Of Uhrf1 In Complex With Histone Tail
authors K.Arita, K.Sugita, M.Unoki, R.Hamamoto, N.Sekiyama, H.Tochio, M.Ar M.Shirakawa
compound source
Molecule: E3 Ubiquitin-Protein Ligase Uhrf1
Chain: A
Fragment: Phd Finger Domain
Ec: 6.3.2.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Uhrf1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H3.3
Chain: B
Fragment: Residues In Unp 2-12
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 1 2 1
R_factor 0.159 R_Free 0.196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.210 36.137 34.175 90.00 110.69 90.00
method X-Ray Diffractionresolution 1.41 Å
ligand EDO, ZN enzyme Ligase E.C.6.3.2 BRENDA
note 3ASL is a representative structure
Primary referenceRecognition of modification status on a histone H3 tail by linked histone reader modules of the epigenetic regulator UHRF1., Arita K, Isogai S, Oda T, Unoki M, Sugita K, Sekiyama N, Kuwata K, Hamamoto R, Tochio H, Sato M, Ariyoshi M, Shirakawa M, Proc Natl Acad Sci U S A. 2012 Aug 7;109(32):12950-5. Epub 2012 Jul 25. PMID:22837395
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (3asl.pdb1.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 3ASL
  • CSU: Contacts of Structural Units for 3ASL
  • Structure Factors (212 Kb)
  • Retrieve 3ASL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ASL from S2C, [Save to disk]
  • Re-refined 3asl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ASL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ASL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3ASL, from MSDmotif at EBI
  • Fold representative 3asl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3asl_B] [3asl] [3asl_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3ASL: [PHD] [RING ] by SMART
  • Other resources with information on 3ASL
  • Community annotation for 3ASL at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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