3B0U date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand FMN, H2U enzyme
Gene
Ontology
ChainFunctionProcessComponent
Y, X


Primary referenceMolecular basis of dihydrouridine formation on tRNA., Yu F, Tanaka Y, Yamashita K, Suzuki T, Nakamura A, Hirano N, Suzuki T, Yao M, Tanaka I, Proc Natl Acad Sci U S A. 2011 Dec 6;108(49):19593-8. Epub 2011 Nov 28. PMID:22123979
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (221 Kb) [Save to disk]
  • Biological Unit Coordinates (3b0u.pdb1.gz) 108 Kb
  • Biological Unit Coordinates (3b0u.pdb2.gz) 108 Kb
  • LPC: Ligand-Protein Contacts for 3B0U
  • CSU: Contacts of Structural Units for 3B0U
  • Structure Factors (416 Kb)
  • Retrieve 3B0U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3B0U from S2C, [Save to disk]
  • Re-refined 3b0u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3B0U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3b0u_A] [3b0u_B] [3b0u_X] [3b0u_Y] [3b0u]
  • SWISS-PROT database:

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