3BPT Hydrolase date Dec 19, 2007
title Crystal Structure Of Human Beta-Hydroxyisobutyryl-Coa Hydrol Complex With Quercetin
authors E.S.Pilka, C.Phillips, O.N.F.King, K.Guo, F.Von Delft, A.C.W.Pike C.H.Arrowsmith, J.Weigelt, A.M.Edwards, U.Oppermann, Structural Consortium (Sgc)
compound source
Molecule: 3-Hydroxyisobutyryl-Coa Hydrolase
Chain: A
Fragment: Residues 32-386
Synonym: 3-Hydroxyisobutyryl-Coenzyme A Hydrolase, Hibyl-Co Coa Hydrolase;
Ec: 3.1.2.4
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hibch
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Cthf
symmetry Space Group: P 1 21 1
R_factor 0.147 R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.096 76.642 55.789 90.00 108.24 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand HIU, MSE, QUE enzyme Hydrolase E.C.3.1.2.4 BRENDA
note 3BPT is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (3bpt.pdb1.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 3BPT
  • CSU: Contacts of Structural Units for 3BPT
  • Likely Quarternary Molecular Structure file(s) for 3BPT
  • Structure Factors (773 Kb)
  • Retrieve 3BPT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BPT from S2C, [Save to disk]
  • Re-refined 3bpt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3BPT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BPT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3BPT, from MSDmotif at EBI
  • Fold representative 3bpt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bpt] [3bpt_A]
  • SWISS-PROT database: [Q6NVY1]
  • Domain organization of [HIBCH_HUMAN] by SWISSPFAM
  • Other resources with information on 3BPT
  • Community annotation for 3BPT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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