3BZI Transferase date Jan 18, 2008
title Molecular And Structural Basis Of Polo-Like Kinase 1 Substrate Recognition: Implications In Centrosomal Localization
authors B.Garcia-Alvarez, G.De Carcer, S.Ibanez, E.Bragado-Nilsson, G.Montoya
compound source
Molecule: Serinethreonine-Protein Kinase Plk1
Chain: A
Fragment: Polo Box Domain
Synonym: Polo-Like Kinase 1, Plk-1, Serinethreonine- Protein Kinase 13, Stpk13;
Ec: 2.7.11.21
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Plk1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6-1p

Molecule: 9 Mer Peptide From M-Phase Inducer Phosphatase 3
Chain: E
Synonym: 9 Mer Peptide From Dual Specificity Phosphatase Cdc25c;
Engineered: Yes

Synthetic: Yes
Other_details: Synthetic Peptide
symmetry Space Group: P 21 21 21
R_factor 0.174 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.726 67.481 87.888 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand FMT, TPO enzyme Transferase E.C.2.7.11.21 BRENDA
note 3BZI supersedes 2OJS
Primary referenceMolecular and structural basis of polo-like kinase 1 substrate recognition: Implications in centrosomal localization., Garcia-Alvarez B, de Carcer G, Ibanez S, Bragado-Nilsson E, Montoya G, Proc Natl Acad Sci U S A. 2007 Feb 27;104(9):3107-12. Epub 2007 Feb 16. PMID:17307877
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (3bzi.pdb1.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 3BZI
  • CSU: Contacts of Structural Units for 3BZI
  • Likely Quarternary Molecular Structure file(s) for 3BZI
  • Structure Factors (202 Kb)
  • Retrieve 3BZI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BZI from S2C, [Save to disk]
  • Re-refined 3bzi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3BZI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BZI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3BZI, from MSDmotif at EBI
  • Fold representative 3bzi from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bzi_A] [3bzi] [3bzi_E]
  • SWISS-PROT database: [P30307] [P53350]
  • Domain organization of [MPIP3_HUMAN] [PLK1_HUMAN] by SWISSPFAM
  • Other resources with information on 3BZI
  • Community annotation for 3BZI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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