3C5R Protein Binding date Feb 01, 2008
title Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences
authors D.Fox Iii, I.Le Trong, R.E.Stenkamp, R.E.Klevit
compound source
Molecule: Brca1-Associated Ring Domain Protein 1
Chain: A, B
Fragment: Bard1 Ankyrin Repeat Domain (Unp Residues 425-555
Synonym: Bard-1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bard1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet151d
symmetry Space Group: P 1 21 1
R_factor 0.199 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.847 74.112 51.174 90.00 105.23 90.00
method X-Ray Diffractionresolution 2.00 Å
Primary referenceCrystal Structure of the BARD1 Ankyrin Repeat Domain and Its Functional Consequences., Fox D 3rd, Le Trong I, Rajagopal P, Brzovic PS, Stenkamp RE, Klevit RE, J Biol Chem. 2008 Jul 25;283(30):21179-86. Epub 2008 May 14. PMID:18480049
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (3c5r.pdb1.gz) 40 Kb
  • Biological Unit Coordinates (3c5r.pdb2.gz) 39 Kb
  • Biological Unit Coordinates (3c5r.pdb3.gz) 78 Kb
  • CSU: Contacts of Structural Units for 3C5R
  • Likely Quarternary Molecular Structure file(s) for 3C5R
  • Structure Factors (250 Kb)
  • Retrieve 3C5R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3C5R from S2C, [Save to disk]
  • Re-refined 3c5r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3C5R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3C5R
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3C5R, from MSDmotif at EBI
  • Fold representative 3c5r from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3c5r_B] [3c5r] [3c5r_A]
  • SWISS-PROT database: [Q99728]
  • Domain organization of [BARD1_HUMAN] by SWISSPFAM
  • Domain found in 3C5R: [ANK ] by SMART
  • Other resources with information on 3C5R
  • Community annotation for 3C5R at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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