3CFW Cell Adhesion date Mar 04, 2008
title L-Selectin Lectin And Egf Domains
authors P.Mehta, V.Oganesyan, S.Terzyan, T.Mather, R.P.Mcever
compound source
Molecule: L-Selectin
Chain: A
Fragment: Egf Domain (Unp Residues 39-194)
Synonym: Selectin L (Lymphocyte Adhesion Molecule 1), Isofo Selectin L, Lymphocyte Adhesion Molecule 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: L-Selectin, Sell
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_strain: Lec 1
Expression_system_cell_line: Ovary Cells
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pee14.1
symmetry Space Group: I 2 3
R_factor 0.201 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
118.477 118.477 118.477 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand BMA, CA, MAN, NAG enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (3cfw.pdb1.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 3CFW
  • CSU: Contacts of Structural Units for 3CFW
  • Likely Quarternary Molecular Structure file(s) for 3CFW
  • Structure Factors (113 Kb)
  • Retrieve 3CFW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CFW from S2C, [Save to disk]
  • Re-refined 3cfw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CFW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CFW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3CFW, from MSDmotif at EBI
  • Fold representative 3cfw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cfw] [3cfw_A]
  • SWISS-PROT database: [P14151]
  • Domain organization of [LYAM1_HUMAN] by SWISSPFAM
  • Domains found in 3CFW: [CLECT] [EGF ] by SMART
  • Other resources with information on 3CFW
  • Community annotation for 3CFW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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