3CZH Oxidoreductase date Apr 29, 2008
title Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
authors N.V.Strushkevich, W.Tempel, A.A.Gilep, P.Loppnau, C.H.Arrowsmith A.M.Edwards, C.Bountra, M.Wilkstrom, A.Bochkarev, H.Park, Struct Genomics Consortium (Sgc)
compound source
Molecule: Cytochrome P450 2r1
Chain: A, B
Synonym: Vitamin D 25-Hydroxylase
Ec: 1.14.14.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Gene: Cyp2r1
Expression_system: Escherichia Coli
Expression_system_strain: Jm109
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcw
symmetry Space Group: C 2 2 21
R_factor 0.205 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
137.361 163.393 152.289 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand D2V, GLC, HEM, UNX enzyme Oxidoreductase E.C.1.14.14 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk]
  • Biological Unit Coordinates (3czh.pdb1.gz) 80 Kb
  • Biological Unit Coordinates (3czh.pdb2.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 3CZH
  • CSU: Contacts of Structural Units for 3CZH
  • Likely Quarternary Molecular Structure file(s) for 3CZH
  • Structure Factors (1197 Kb)
  • Retrieve 3CZH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CZH from S2C, [Save to disk]
  • Re-refined 3czh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CZH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CZH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3CZH, from MSDmotif at EBI
  • Fold representative 3czh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3czh_B] [3czh] [3czh_A]
  • SWISS-PROT database: [Q6VVX0]
  • Domain organization of [CP2R1_HUMAN] by SWISSPFAM
  • Other resources with information on 3CZH
  • Community annotation for 3CZH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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