3DLJ Hydrolase date Jun 27, 2008
title Crystal Structure Of Human Carnosine Dipeptidase 1
authors A.Dong, E.Dobrovetsky, A.Seitova, H.He, W.Tempel, I.Kozieradzki, C.H.Arrowsmith, J.Weigelt, C.Bountra, A.M.Edwards, A.Bochkarev, Structural Genomics Consortium (Sgc)
compound source
Molecule: Beta-Ala-His Dipeptidase
Chain: A, B
Synonym: Carnosine Dipeptidase 1, Cndp Dipeptidase 1, Serum Carnosinase, Glutamate Carboxypeptidase-Like Protein 2;
Ec: 3.4.13.20
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Gene: Cndp1, Cn1, Cpgl2
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9 Insect Cells
Expression_system_vector_type: Baculovirus
Expression_system_vector: Pfhmsp-Lic-N
symmetry Space Group: P 1 21 1
R_factor 0.200 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.106 75.613 103.716 90.00 109.79 90.00
method X-Ray Diffractionresolution 2.26 Å
ligand SO4, UNX, ZN enzyme Hydrolase E.C.3.4.13.20 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (155 Kb) [Save to disk]
  • Biological Unit Coordinates (3dlj.pdb1.gz) 77 Kb
  • Biological Unit Coordinates (3dlj.pdb2.gz) 75 Kb
  • Biological Unit Coordinates (3dlj.pdb3.gz) 148 Kb
  • LPC: Ligand-Protein Contacts for 3DLJ
  • CSU: Contacts of Structural Units for 3DLJ
  • Likely Quarternary Molecular Structure file(s) for 3DLJ
  • Structure Factors (776 Kb)
  • Retrieve 3DLJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DLJ from S2C, [Save to disk]
  • Re-refined 3dlj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DLJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DLJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3DLJ, from MSDmotif at EBI
  • Fold representative 3dlj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dlj_A] [3dlj] [3dlj_B]
  • SWISS-PROT database: [Q96KN2]
  • Domain organization of [CNDP1_HUMAN] by SWISSPFAM
  • Other resources with information on 3DLJ
  • Community annotation for 3DLJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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