OCA Atlas for 3DM1

3DM1

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

M3L

enzyme

Gene
Ontology

Chain	Function	Process	Component
G, E, A, C

Primary reference

Structural basis of the chromodomain of Cbx3 bound to methylated peptides from histone h1 and G9a., Ruan J, Ouyang H, Amaya MF, Ravichandran M, Loppnau P, Min J, Zang J, PLoS One. 2012;7(4):e35376. doi: 10.1371/journal.pone.0035376. Epub 2012 Apr 13. PMID:22514736

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]

Biological Unit Coordinates (3dm1.pdb1.gz) 12 Kb

Biological Unit Coordinates (3dm1.pdb2.gz) 12 Kb

Biological Unit Coordinates (3dm1.pdb3.gz) 12 Kb

Biological Unit Coordinates (3dm1.pdb4.gz) 12 Kb

Biological Unit Coordinates (3dm1.pdb5.gz) 43 Kb

LPC: Ligand-Protein Contacts for 3DM1

CSU: Contacts of Structural Units for 3DM1

Likely Quarternary Molecular Structure file(s) for 3DM1

Structure Factors (127 Kb)

Retrieve 3DM1 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3DM1 from S2C, [Save to disk]

Re-refined 3dm1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DM1 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3dm1] [3dm1_A] [3dm1_B] [3dm1_C] [3dm1_D] [3dm1_E] [3dm1_F] [3dm1_G] [3dm1_H]

SWISS-PROT database: [Q13185] [Q96KQ7]

Domain found in 3DM1: [CHROMO ] by SMART

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