3DTD Crystal structure of invasion associated protein b from bartonella henselae date
authors Almo SC, Burley SK, Freeman J, Groshong C, Koss J, New York SGX Research Center for Structural Genomics (NYSGXRC), Ozyurt S, Patskovsky Y, Sauder JM, Slocombe A, Smith D, Wasserman S
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand GOL enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (289 Kb) [Save to disk]
  • Biological Unit Coordinates (3dtd.pdb1.gz) 274 Kb
  • Biological Unit Coordinates (3dtd.pdb2.gz) 50 Kb
  • Biological Unit Coordinates (3dtd.pdb3.gz) 50 Kb
  • Biological Unit Coordinates (3dtd.pdb4.gz) 50 Kb
  • Biological Unit Coordinates (3dtd.pdb5.gz) 49 Kb
  • Biological Unit Coordinates (3dtd.pdb6.gz) 50 Kb
  • Biological Unit Coordinates (3dtd.pdb7.gz) 50 Kb
  • Biological Unit Coordinates (3dtd.pdb8.gz) 26 Kb
  • Biological Unit Coordinates (3dtd.pdb9.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 3DTD
  • CSU: Contacts of Structural Units for 3DTD
  • Likely Quarternary Molecular Structure file(s) for 3DTD
  • Structure Factors (2125 Kb)
  • Retrieve 3DTD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DTD from S2C, [Save to disk]
  • Re-refined 3dtd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3DTD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3DTD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DTD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dtd_I] [3dtd_B] [3dtd_A] [3dtd] [3dtd_C] [3dtd_H] [3dtd_E] [3dtd_L] [3dtd_K] [3dtd_D] [3dtd_J] [3dtd_F] [3dtd_G]
  • SWISS-PROT database: [Q6G4Y3]
  • Domain organization of [Q6G4Y3_BARHE] by SWISSPFAM
    • Other resources with information on 3DTD
  • Community annotation for 3DTD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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