3E0C	Dna Binding Protein	date	Jul 31, 2008
title	Crystal Structure Of Dna Damage-Binding Protein 1(Ddb1)
authors	M.F.Amaya, L.Xu, H.Hao, C.Bountra, M.Wickstroem, C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, J.Min, Structural Genomics Consortiu
compound		source
Molecule: Dna Damage-Binding Protein 1 Chain: A Synonym: Damage-Specific Dna-Binding Protein 1, Uv-Damaged Binding Factor, Ddb P127 Subunit, Dna Damage-Binding Protei Uv-Damaged Dna-Binding Protein 1, Uv-Ddb 1, Xeroderma Pigme Group E-Complementing Protein, Xpce, Xpe-Binding Factor, Xp X-Associated Protein 1, Xap-1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ddb1, Xap1 Expression_system: Baculovirus
symmetry	Space Group: P 21 21 21	R_factor 0.224 R_Free 0.283
crystal cell	length a length b length c angle alpha angle beta angle gamma 62.607 124.153 167.822 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.41 Å
Gene Ontology	Chain Function Process Component A
Primary reference	Structure and function of WD40 domain proteins., Xu C, Min J, Protein Cell. 2011 Mar;2(3):202-14. Epub 2011 Apr 6. PMID:21468892

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (160 Kb) [Save to disk] Biological Unit Coordinates (3e0c.pdb1.gz) 154 Kb CSU: Contacts of Structural Units for 3E0C Likely Quarternary Molecular Structure file(s) for 3E0C Structure Factors (391 Kb) Retrieve 3E0C in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3E0C from S2C, [Save to disk] Re-refined 3e0c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3E0C in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3E0C

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3E0C, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3e0c_A] [3e0c] SWISS-PROT database: [Q16531] Domain organization of [DDB1_HUMAN] by SWISSPFAM

Other resources with information on 3E0C

Community annotation for 3E0C at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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