3EO1 Immune System Cytokine date Sep 26, 2008
title Structure Of The Fab Fragment Of Gc-1008 In Complex With Transforming Growth Factor-Beta 3
authors C.Gruetter, M.G.Gruetter
compound source
Molecule: Gc-1008 Fab Light Chain
Chain: A, D, G, J
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_taxid: 10090
Expression_system: Mus Musculus
Expression_system_taxid: 10090
Expression_system_strain: Ns0

Molecule: Gc-1008 Fab Heavy Chain
Chain: B, E, H, K
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_taxid: 10090
Expression_system: Mus Musculus
Expression_system_taxid: 10090
Expression_system_strain: Ns0

Molecule: Transforming Growth Factor Beta-3
Chain: C, F, I, L
Fragment: Unp Residues 301-412, Receptor Binding Fragment
Synonym: Tgf-Beta-3
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tgfb3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.255 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
149.040 149.130 149.660 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.10 Å
Gene
Ontology
ChainFunctionProcessComponent
F, C, I, L


Primary referenceA cytokine-neutralizing antibody as a structural mimetic of 2 receptor interactions., Grutter C, Wilkinson T, Turner R, Podichetty S, Finch D, McCourt M, Loning S, Jermutus L, Grutter MG, Proc Natl Acad Sci U S A. 2008 Dec 23;105(51):20251-6. Epub 2008 Dec 10. PMID:19073914
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (321 Kb) [Save to disk]
  • Biological Unit Coordinates (3eo1.pdb1.gz) 160 Kb
  • Biological Unit Coordinates (3eo1.pdb2.gz) 160 Kb
  • CSU: Contacts of Structural Units for 3EO1
  • Likely Quarternary Molecular Structure file(s) for 3EO1
  • Structure Factors (536 Kb)
  • Retrieve 3EO1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EO1 from S2C, [Save to disk]
  • Re-refined 3eo1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3EO1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3EO1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3EO1, from MSDmotif at EBI
  • Fold representative 3eo1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3eo1_H] [3eo1_I] [3eo1_F] [3eo1_K] [3eo1_G] [3eo1] [3eo1_A] [3eo1_C] [3eo1_J] [3eo1_D] [3eo1_L] [3eo1_E] [3eo1_B] [3eo1_]
  • SWISS-PROT database: [P10600]
  • Domain organization of [TGFB3_HUMAN] by SWISSPFAM
  • Domains found in 3EO1: [IG_like] [IGv] [TGFB ] by SMART
  • Other resources with information on 3EO1
  • Community annotation for 3EO1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science