3EY6 Isomerase date Oct 19, 2008
title Crystal Structure Of The Fk506-Binding Domain Of Human Fkbp3
authors C.Parthier, M.Maestre-Martinez, P.Neumann, F.Edlich, G.Fischer, C M.T.Stubbs
compound source
Molecule: Fk506-Binding Protein 8
Chain: A
Fragment: Fk506 Binding Domain
Synonym: Peptidyl-Prolyl Cis-Trans Isomerase, Ppiase, Rotam Kda Fk506-Binding Protein, Hfkbp38, Fkbpr38;
Ec: 5.2.1.8
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fkbp38, Fkbp8
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 1 21 1
R_factor 0.135 R_Free 0.161
crystal
cell
length a length b length c angle alpha angle beta angle gamma
29.057 60.288 30.840 90.00 97.59 90.00
method X-Ray Diffractionresolution 1.05 Å
ligand
enzyme Isomerase E.C.5.2.1.8 BRENDA
note 3EY6 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA charge-sensitive loop in the FKBP38 catalytic domain modulates Bcl-2 binding., Maestre-Martinez M, Haupt K, Edlich F, Neumann P, Parthier C, Stubbs MT, Fischer G, Lucke C, J Mol Recognit. 2011 Jan;24(1):23-34. PMID:20140889
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (3ey6.pdb1.gz) 47 Kb
  • CSU: Contacts of Structural Units for 3EY6
  • Structure Factors (2122 Kb)
  • Retrieve 3EY6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EY6 from S2C, [Save to disk]
  • Re-refined 3ey6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3EY6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3EY6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3EY6, from MSDmotif at EBI
  • Fold representative 3ey6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ey6_A] [3ey6]
  • SWISS-PROT database: [Q14318]
  • Domain organization of [FKBP8_HUMAN] by SWISSPFAM
  • Other resources with information on 3EY6
  • Community annotation for 3EY6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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