3F2O Apoptosis Hydrolase date Oct 30, 2008
title Crystal Structure Of Human Splaryanodine Receptor Domain An Containing 1 (Spsb1) In Complex With A 20-Residue Vasa Pept
authors P.Filippakopoulos, T.Sharpe, T.Keates, J.W.Murray, P.Savitsky, A. A.C.W.Pike, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, J.Weigelt C.Bountra, S.Knapp, A.Bullock, Structural Genomics Consortium
compound source
Molecule: Spry Domain-Containing Socs Box Protein 1
Chain: A, B
Fragment: Residues 1-233
Synonym: Ssb-1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Spsb1, Ssb1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4

Molecule: 20-Mer Peptide From Atp-Dependent Rna Helicase Va
Chain: C, D
Ec: 3.6.1.-
Engineered: Yes

Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized. The Of The Peptide Is Naturally Found In Drosophila Melanogaste Fly)
symmetry Space Group: P 21 21 21
R_factor 0.180 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.665 80.654 86.864 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand
enzyme Hydrolase E.C.3.6.1 BRENDA
Primary referenceStructural basis for Par-4 recognition by the SPRY domain- and SOCS box-containing proteins SPSB1, SPSB2, and SPSB4., Filippakopoulos P, Low A, Sharpe TD, Uppenberg J, Yao S, Kuang Z, Savitsky P, Lewis RS, Nicholson SE, Norton RS, Bullock AN, J Mol Biol. 2010 Aug 20;401(3):389-402. Epub 2010 Jun 16. PMID:20561531
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (3f2o.pdb1.gz) 41 Kb
  • Biological Unit Coordinates (3f2o.pdb2.gz) 38 Kb
  • CSU: Contacts of Structural Units for 3F2O
  • Likely Quarternary Molecular Structure file(s) for 3F2O
  • Structure Factors (456 Kb)
  • Retrieve 3F2O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3F2O from S2C, [Save to disk]
  • Re-refined 3f2o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3F2O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3F2O
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3F2O, from MSDmotif at EBI
  • Fold representative 3f2o from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3f2o_A] [3f2o_B] [3f2o] [3f2o_C] [3f2o_D]
  • SWISS-PROT database: [Q96BD6] [P09052]
  • Domain organization of [SPSB1_HUMAN] [VASA_DROME] by SWISSPFAM
  • Domain found in 3F2O: [SPRY ] by SMART
  • Other resources with information on 3F2O
  • Community annotation for 3F2O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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