3F5P Complex Structure of Insulin-like Growth Factor Receptor and 3-Cyanoquinoline Inhibitor date
authors Xu, W., Miller, L.M., Mayer, S.C., Berger, D.M., Boschelli, D.H., Boschelli, F.
compound source
symmetry
R_factor
R_Free 0.2580
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
ligand 741, PTR BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
S, F, A, J, T, K, E, B, H, M, C, D, R, I, G, L


Primary referenceLead identification to generate 3-cyanoquinoline inhibitors of insulin-like growth factor receptor (IGF-1R) for potential use in cancer treatment., Miller LM, Mayer SC, Berger DM, Boschelli DH, Boschelli F, Di L, Du X, Dutia M, Floyd MB, Johnson M, Kenny CH, Krishnamurthy G, Moy F, Petusky S, Tkach D, Torres N, Wu B, Xu W, Bioorg Med Chem Lett. 2009 Jan 1;19(1):62-6. Epub 2008 Nov 17. PMID:19041240
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (803 Kb) [Save to disk]
  • Biological Unit Coordinates (3f5p.pdb1.gz) 60 Kb
  • Biological Unit Coordinates (3f5p.pdb2.gz) 60 Kb
  • Biological Unit Coordinates (3f5p.pdb3.gz) 60 Kb
  • Biological Unit Coordinates (3f5p.pdb4.gz) 59 Kb
  • Biological Unit Coordinates (3f5p.pdb5.gz) 59 Kb
  • Biological Unit Coordinates (3f5p.pdb6.gz) 59 Kb
  • Biological Unit Coordinates (3f5p.pdb7.gz) 60 Kb
  • Biological Unit Coordinates (3f5p.pdb8.gz) 60 Kb
  • Biological Unit Coordinates (3f5p.pdb9.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 3F5P
  • CSU: Contacts of Structural Units for 3F5P
  • Likely Quarternary Molecular Structure file(s) for 3F5P
  • Structure Factors (799 Kb)
  • Retrieve 3F5P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3F5P from S2C, [Save to disk]
  • Re-refined 3f5p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3F5P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3F5P
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3F5P, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3f5p_J] [3f5p_F] [3f5p_B] [3f5p_T] [3f5p_E] [3f5p_S] [3f5p_C] [3f5p_A] [3f5p_L] [3f5p_H] [3f5p_G] [3f5p_I] [3f5p_K] [3f5p_R] [3f5p_D] [3f5p] [3f5p_M]
  • SWISS-PROT database: [P08069]
  • Domain organization of [IGF1R_HUMAN] by SWISSPFAM
  • Domain found in 3F5P: [TyrKc ] by SMART
    • Other resources with information on 3F5P
  • Community annotation for 3F5P at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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