3FA2 Protein Binding date Nov 14, 2008
title Crystal Structure Of The Brca1 Associated Ring Domain (Bard1 Brct Domains
authors D.Fox Iii, I.Le Trong, R.E.Stenkamp, R.E.Klevit
compound source
Molecule: Brca1-Associated Ring Domain Protein 1
Chain: A, B
Fragment: Tandem Brct Domains
Synonym: Bard-1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bard1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet151d
symmetry Space Group: P 1 21 1
R_factor 0.222 R_Free 0.298
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.979 67.466 86.783 90.00 99.20 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand GOL, PO4 enzyme
note 3FA2 is a representative structure
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (3fa2.pdb1.gz) 35 Kb
  • Biological Unit Coordinates (3fa2.pdb2.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 3FA2
  • CSU: Contacts of Structural Units for 3FA2
  • Structure Factors (371 Kb)
  • Retrieve 3FA2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FA2 from S2C, [Save to disk]
  • Re-refined 3fa2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FA2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FA2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3FA2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1t3fa2, region A:109-214 [Jmol] [rasmolscript] [script source]
        - Domain d1h3fa2, region A:352-432 [Jmol] [rasmolscript] [script source]
        - Domain d1r3fa2, region A:8-250 [Jmol] [rasmolscript] [script source]
  • Fold representative 3fa2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fa2] [3fa2_B] [3fa2_A]
  • SWISS-PROT database: [Q99728]
  • Domain organization of [BARD1_HUMAN] by SWISSPFAM
  • Domain found in 3FA2: [BRCT ] by SMART
  • Other resources with information on 3FA2
  • Community annotation for 3FA2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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