3FFM Cell Cycle date Dec 04, 2008
title The Crystal Structure Of Human Gadd45g
authors W.Z.Zhang, S.Fu, Z.H.Zeng, Z.H.Rao
compound source
Molecule: Growth Arrest And Dna-Damage-Inducible Protein Gadd45 Gamma;
Chain: A
Synonym: Cytokine-Responsive Protein Cr6, Dna-Damage- Inducible Transcript 2, Ddit-2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cr6, Ddit2, Gadd45g
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1
symmetry Space Group: I 21 3
R_factor 0.233 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
126.413 126.413 126.413 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • Biological Unit Coordinates (3ffm.pdb1.gz) 47 Kb
  • CSU: Contacts of Structural Units for 3FFM
  • Structure Factors (229 Kb)
  • Retrieve 3FFM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FFM from S2C, [Save to disk]
  • Re-refined 3ffm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FFM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FFM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3FFM, from MSDmotif at EBI
  • Fold representative 3ffm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ffm_A] [3ffm]
  • SWISS-PROT database: [O95257]
  • Domain organization of [GA45G_HUMAN] by SWISSPFAM
  • Other resources with information on 3FFM
  • Community annotation for 3FFM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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