3G73 Transcription Dna date Feb 09, 2009
title Structure Of The Foxm1 Dna Binding
authors D.R.Littler, A.Perrakis, R.G.Hibbert, R.H.Medema
compound source
Molecule: Forkhead Box Protein M1
Chain: A, B
Fragment: Dna-Binding Domain, Unp Residues 222-360
Synonym: Forkhead-Related Protein Fkhl16, Hepatocyte Nuclea Forkhead Homolog 11, Hnf-3fork-Head Homolog 11, Hfh-11, Wi Factor From Ins-1 Cells, M-Phase Phosphoprotein 2, Mpm-2 Re Phosphoprotein 2, Transcription Factor Trident;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fkhl16, Foxm1, Hfh11, Mpp2, Win
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Lic

Molecule: Dna (5'- D(Papapaptptpgptptptpaptpapapapcpapgpcpc 3');
Chain: C
Engineered: Yes
Other_details: Forkhead Consensus Sequence Plus Strand

Synthetic: Yes
Other_details: Dna Oligo

Molecule: Dna (5'- D(Ptptpcpgpgpgpcptpgptptptpaptpapapapcpa 3');
Chain: D
Engineered: Yes
Other_details: Forkhead Consensus Sequence Minus Strand

Synthetic: Yes
Other_details: Dna Oligo
symmetry Space Group: C 2 2 21
R_factor 0.204 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.070 119.750 152.970 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.21 Å
ligand MG enzyme
note 3G73 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of the FoxM1 DNA-recognition domain bound to a promoter sequence., Littler DR, Alvarez-Fernandez M, Stein A, Hibbert RG, Heidebrecht T, Aloy P, Medema RH, Perrakis A, Nucleic Acids Res. 2010 Mar 31. PMID:20360045
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (3g73.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 3G73
  • CSU: Contacts of Structural Units for 3G73
  • Likely Quarternary Molecular Structure file(s) for 3G73
  • Structure Factors (424 Kb)
  • Retrieve 3G73 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3G73 from S2C, [Save to disk]
  • Re-refined 3g73 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3G73 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3G73
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3G73, from MSDmotif at EBI
  • Fold representative 3g73 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3g73] [3g73_C] [3g73_D] [3g73_B] [3g73_A]
  • SWISS-PROT database: [Q08050]
  • Domain organization of [FOXM1_HUMAN] by SWISSPFAM
  • Domain found in 3G73: [FH ] by SMART
  • Other resources with information on 3G73
  • Community annotation for 3G73 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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