3GEY Transferase date Feb 26, 2009
title Crystal Structure Of Human Poly(Adp-Ribose) Polymerase 15, C Fragment In Complex With An Inhibitor Pj34
authors T.Karlberg, M.I.Siponen, C.H.Arrowsmith, H.Berglund, C.Bountra, R A.M.Edwards, S.Flodin, A.Flores, S.Graslund, M.Hammarstrom, A.Jo I.Johansson, T.Kotenyova, M.Moche, P.Nordlund, T.Nyman, C.Persso J.Sagemark, P.Schutz, A.G.Thorsell, L.Tresaugues, S.Van Den Ber J.Weigelt, M.Welin, M.Wisniewska, H.Schuler, Structural Genomic Consortium (Sgc)
compound source
Molecule: Poly [Adp-Ribose] Polymerase 15
Chain: A, B, C, D
Fragment: Catalytic Domain: Residues 459-656
Synonym: Parp-15, B-Aggressive Lymphoma Protein 3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bal3, Parp15
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) R3 Prare
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Bsa4
symmetry Space Group: P 1 21 1
R_factor 0.212 R_Free 0.270
length a length b length c angle alpha angle beta angle gamma
45.080 137.630 68.050 90.00 90.37 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand P34 enzyme Transferase E.C. BRENDA
A, D, C, B

Primary referenceStructural Basis for Lack of ADP-Ribosyltransferase Activity in Poly(ADP-Ribose) Polymerase-13/Zinc Finger Antiviral Protein., Karlberg T, Klepsch M, Thorsell AG, Andersson CD, Linusson A, Schuler H, J Biol Chem. 2015 Jan 29. pii: jbc.M114.630160. PMID:25635049
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (132 Kb) [Save to disk]
  • Biological Unit Coordinates (3gey.pdb1.gz) 33 Kb
  • Biological Unit Coordinates (3gey.pdb2.gz) 34 Kb
  • Biological Unit Coordinates (3gey.pdb3.gz) 33 Kb
  • Biological Unit Coordinates (3gey.pdb4.gz) 34 Kb
  • Biological Unit Coordinates (3gey.pdb5.gz) 65 Kb
  • Biological Unit Coordinates (3gey.pdb6.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 3GEY
  • CSU: Contacts of Structural Units for 3GEY
  • Likely Quarternary Molecular Structure file(s) for 3GEY
  • Structure Factors (320 Kb)
  • Retrieve 3GEY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GEY from S2C, [Save to disk]
  • Re-refined 3gey structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GEY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GEY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3GEY, from MSDmotif at EBI
  • Fold representative 3gey from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gey] [3gey_D] [3gey_A] [3gey_B] [3gey_C]
  • SWISS-PROT database: [Q460N3]
  • Domain organization of [PAR15_HUMAN] by SWISSPFAM
  • Other resources with information on 3GEY
  • Community annotation for 3GEY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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