3GGE Protein Binding date Feb 27, 2009
title Crystal Structure Of The Pdz Domain Of Pdz Domain-Containing Gipc2
authors A.Chaikuad, V.Hozjan, W.Yue, C.Cooper, J.Elkins, A.C.W.Pike, A.K.R P.Filippakopoulos, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, J. C.Bountra, U.Oppermann, Structural Genomics Consortium (Sgc)
compound source
Molecule: Pdz Domain-Containing Protein Gipc2
Chain: A, B, C
Fragment: Pdz Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gipc2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-R3-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 41 2 2
R_factor 0.223 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.510 83.510 160.310 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand GOL, SO4 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (3gge.pdb1.gz) 47 Kb
  • Biological Unit Coordinates (3gge.pdb2.gz) 93 Kb
  • LPC: Ligand-Protein Contacts for 3GGE
  • CSU: Contacts of Structural Units for 3GGE
  • Likely Quarternary Molecular Structure file(s) for 3GGE
  • Structure Factors (844 Kb)
  • Retrieve 3GGE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GGE from S2C, [Save to disk]
  • Re-refined 3gge structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GGE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GGE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3GGE, from MSDmotif at EBI
  • Fold representative 3gge from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gge_A] [3gge] [3gge_C] [3gge_B]
  • SWISS-PROT database: [Q8TF65]
  • Domain organization of [GIPC2_HUMAN] by SWISSPFAM
  • Domain found in 3GGE: [PDZ ] by SMART
  • Other resources with information on 3GGE
  • Community annotation for 3GGE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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