3H59 Transferase date Apr 21, 2009
title Hepatitis C Virus Polymerase Ns5b With Thiazine Inhibitor 2
authors S.F.Harris, M.Ghate
compound source
Molecule: Rna-Directed Rna Polymerase
Chain: A, B
Fragment: Sequence Database Residues 2421-2989
Synonym: Ns5b, P68
Ec: 2.7.7.48
Engineered: Yes
Organism_scientific: Hepatitis C Virus
Organism_taxid: 11105
Strain: Bk
Gene: Ns5b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.193 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.855 106.417 127.195 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand H59 BindingDB enzyme Transferase E.C.2.7.7.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceNon-nucleoside inhibitors of HCV polymerase NS5B. Part 3: Synthesis and optimization studies of benzothiazine-substituted tetramic acids., de Vicente J, Hendricks RT, Smith DB, Fell JB, Fischer J, Spencer SR, Stengel PJ, Mohr P, Robinson JE, Blake JF, Hilgenkamp RK, Yee C, Zhao J, Elworthy TR, Tracy J, Chin E, Li J, Lui A, Wang B, Oshiro C, Harris SF, Ghate M, Leveque VJ, Najera I, Pogam SL, Rajyaguru S, Ao-Ieong G, Alexandrova L, Fitch B, Brandl M, Masjedizadeh M, Wu SY, Keczer SD, Voronin T, Bioorg Med Chem Lett. 2009 Aug 8. PMID:19700319
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (196 Kb) [Save to disk]
  • Biological Unit Coordinates (3h59.pdb1.gz) 98 Kb
  • Biological Unit Coordinates (3h59.pdb2.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 3H59
  • CSU: Contacts of Structural Units for 3H59
  • Structure Factors (514 Kb)
  • Retrieve 3H59 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3H59 from S2C, [Save to disk]
  • Re-refined 3h59 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3H59 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3H59
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3H59, from MSDmotif at EBI
  • Fold representative 3h59 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3h59] [3h59_B] [3h59_A]
  • SWISS-PROT database: [P26663]
  • Domain organization of [POLG_HCVBK] by SWISSPFAM
  • Other resources with information on 3H59
  • Community annotation for 3H59 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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