3HMW Immune System date May 29, 2009
title Crystal Structure Of Ustekinumab Fab
authors J.Luo
compound source
Molecule: Ustekinumab Fab Light Chain
Chain: L
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293
Other_details: Papain Digested From Mab

Molecule: Ustekinumab Fab Heavy Chain
Chain: H
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293
Other_details: Papain Digested From Mab
symmetry Space Group: P 63 2 2
R_factor 0.228 R_Free 0.287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
139.310 139.310 114.580 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.00 Å
ligand CD enzyme
Primary referenceStructural basis for the dual recognition of IL-12 and IL-23 by ustekinumab., Luo J, Wu SJ, Lacy ER, Orlovsky Y, Baker A, Teplyakov A, Obmolova G, Heavner GA, Richter HT, Benson J, J Mol Biol. 2010 Oct 8;402(5):797-812. Epub 2010 Aug 4. PMID:20691190
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (146 Kb) [Save to disk]
  • Biological Unit Coordinates (3hmw.pdb1.gz) 142 Kb
  • LPC: Ligand-Protein Contacts for 3HMW
  • CSU: Contacts of Structural Units for 3HMW
  • Structure Factors (99 Kb)
  • Retrieve 3HMW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HMW from S2C, [Save to disk]
  • Re-refined 3hmw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HMW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HMW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3HMW, from MSDmotif at EBI
  • Fold representative 3hmw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hmw_L] [3hmw] [3hmw_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3HMW: [IG_like] [IGv ] by SMART
  • Other resources with information on 3HMW
  • Community annotation for 3HMW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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