3HN3 Hydrolase date May 29, 2009
title Human Beta-Glucuronidase At 1.7 A Resolution
authors H.E.Klei, K.Ghosh, R.Anumula
compound source
Molecule: Beta-Glucuronidase
Chain: A, B, D, E
Synonym: Beta-G1
Ec: 3.2.1.31
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Placental Gus
Expression_system: Mus Musculus
Expression_system_taxid: 10090
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmsxnd
symmetry Space Group: P 21 21 21
R_factor 0.203 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.578 123.115 266.135 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand BMA, GUP, MAN, MPD, MRD, NAG enzyme Hydrolase E.C.3.2.1.31 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (465 Kb) [Save to disk]
  • Biological Unit Coordinates (3hn3.pdb1.gz) 455 Kb
  • LPC: Ligand-Protein Contacts for 3HN3
  • CSU: Contacts of Structural Units for 3HN3
  • Structure Factors (3065 Kb)
  • Retrieve 3HN3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HN3 from S2C, [Save to disk]
  • Re-refined 3hn3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HN3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HN3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3HN3, from MSDmotif at EBI
  • Fold representative 3hn3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hn3_B] [3hn3_A] [3hn3_D] [3hn3_E] [3hn3]
  • SWISS-PROT database: [P08236]
  • Domain organization of [BGLR_HUMAN] by SWISSPFAM
  • Other resources with information on 3HN3
  • Community annotation for 3HN3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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