3IHJ Transferase date Jul 30, 2009
title Human Alanine Aminotransferase 2 In Complex With Plp
authors M.Wisniewska, M.I.Siponen, C.H.Arrowsmith, H.Berglund, C.Bountra R.Collins, A.M.Edwards, S.Flodin, A.Flores, S.Graslund, M.Hammar A.Johansson, I.Johansson, T.Karlberg, T.Kotenyova, A.Kotzsch, M. T.K.Nielsen, P.Nordlund, T.Nyman, C.Persson, A.K.Roos, P.Schutz, L.Svensson, A.G.Thorsell, L.Tresaugues, S.Van Den Berg, J.Weige M.Welin, H.Schuler, Structural Genomics Consortium (Sgc)
compound source
Molecule: Alanine Aminotransferase 2
Chain: A
Fragment: Unp Residues 49-523
Synonym: Alt2, Glutamic-Pyruvic Transaminase 2, Glutamate P Transaminase 2, Gpt 2, Glutamic-Alanine Transaminase 2;
Ec: 2.6.1.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gpt2, Aat2, Alt2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) R3 Prare
Expression_system_vector_type: Pnic-Bsa4
symmetry Space Group: P 61 2 2
R_factor 0.189 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.730 92.730 262.870 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand PLP, PO4 enzyme Transferase E.C.2.6.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (3ihj.pdb1.gz) 76 Kb
  • Biological Unit Coordinates (3ihj.pdb2.gz) 148 Kb
  • LPC: Ligand-Protein Contacts for 3IHJ
  • CSU: Contacts of Structural Units for 3IHJ
  • Structure Factors (452 Kb)
  • Retrieve 3IHJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3IHJ from S2C, [Save to disk]
  • Re-refined 3ihj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3IHJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3IHJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3IHJ, from MSDmotif at EBI
  • Fold representative 3ihj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ihj] [3ihj_A]
  • SWISS-PROT database: [Q8TD30]
  • Domain organization of [ALAT2_HUMAN] by SWISSPFAM
  • Other resources with information on 3IHJ
  • Community annotation for 3IHJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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