3KB5	Membrane Protein	date	Oct 20, 2009
title	Pry-Spry Domain Of Human Trim72
authors	E.Y.Park, O.B.Kwon, B.C.Jeong, H.K.Song
compound		source
Molecule: Tripartite Motif-Containing Protein 72 Chain: A Fragment: Pry-Spry Domain, Unp Residues 278-470 Synonym: Mitsugumin-53, Mg53 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pry-Spry Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid
symmetry	Space Group: C 1 2 1	R_factor 0.219 R_Free 0.237
crystal cell	length a length b length c angle alpha angle beta angle gamma 153.747 35.937 33.200 90.00 99.87 90.00
method	X-Ray Diffraction	resolution	1.50 Å
note	3KB5 is a representative structure
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of PRY-SPRY domain of human TRIM72., Park EY, Kwon OB, Jeong BC, Yi JS, Lee CS, Ko YG, Song HK, Proteins. 2009 Oct 30. PMID:19967786

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk] Biological Unit Coordinates (3kb5.pdb1.gz) 34 Kb Biological Unit Coordinates (3kb5.pdb2.gz) 68 Kb CSU: Contacts of Structural Units for 3KB5 Structure Factors (326 Kb) Retrieve 3KB5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3KB5 from S2C, [Save to disk] Re-refined 3kb5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3KB5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3KB5

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 3KB5, from MSDmotif at EBI Fold representative 3kb5 from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3kb5_A] [3kb5] SWISS-PROT database: [Q6ZMU5] Belongs to the synaptosomal vesicle fusion pore (svf-pore) family according to TCDB. Domain organization of [TRI72_HUMAN] by SWISSPFAM Domains found in 3KB5: [PRY] [SPRY ] by SMART

Other resources with information on 3KB5

Community annotation for 3KB5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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