3KDU date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand NKS BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
B, A


Primary referenceDiscovery of an oxybenzylglycine based peroxisome proliferator activated receptor alpha selective agonist 2-((3-((2-(4-chlorophenyl)-5-methyloxazol-4-yl)methoxy)benzyl)(methoxycarb onyl)amino)acetic acid (BMS-687453)., Li J, Kennedy LJ, Shi Y, Tao S, Ye XY, Chen SY, Wang Y, Hernandez AS, Wang W, Devasthale PV, Chen S, Lai Z, Zhang H, Wu S, Smirk RA, Bolton SA, Ryono DE, Zhang H, Lim NK, Chen BC, Locke KT, O'Malley KM, Zhang L, Srivastava RA, Miao B, Meyers DS, Monshizadegan H, Search D, Grimm D, Zhang R, Harrity T, Kunselman LK, Cap M, Kadiyala P, Hosagrahara V, Zhang L, Xu C, Li YX, Muckelbauer JK, Chang C, An Y, Krystek SR, Blanar MA, Zahler R, Mukherjee R, Cheng PT, Tino JA, J Med Chem. 2010 Apr 8;53(7):2854-64. PMID:20218621
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (3kdu.pdb1.gz) 95 Kb
  • Biological Unit Coordinates (3kdu.pdb2.gz) 47 Kb
  • Biological Unit Coordinates (3kdu.pdb3.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 3KDU
  • CSU: Contacts of Structural Units for 3KDU
  • Structure Factors (495 Kb)
  • Retrieve 3KDU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KDU from S2C, [Save to disk]
  • Re-refined 3kdu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KDU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kdu] [3kdu_A] [3kdu_B]
  • SWISS-PROT database:
  • Domain found in 3KDU: [HOLI ] by SMART

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