OCA Atlas for 3KO5

3KO5

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

ADP

enzyme

Gene
Ontology

Chain	Function	Process	Component
F, B, D, A, C, E	aminoacyl-tRNA editing activ... D-aminoacyl-tRNA deacylase a... D-tyrosyl-tRNA(Tyr) deacylas... Gly-tRNA(Ala) hydrolase acti...

Primary reference

Ligand-bound structures provide atomic snapshots for the catalytic mechanism of D-amino acid deacylase., Bhatt TK, Yogavel M, Wydau S, Berwal R, Sharma A, J Biol Chem. 2010 Feb 19;285(8):5917-30. Epub 2009 Dec 9. PMID:20007323

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk]

Biological Unit Coordinates (3ko5.pdb1.gz) 55 Kb

Biological Unit Coordinates (3ko5.pdb2.gz) 57 Kb

Biological Unit Coordinates (3ko5.pdb3.gz) 54 Kb

LPC: Ligand-Protein Contacts for 3KO5

CSU: Contacts of Structural Units for 3KO5

Structure Factors (374 Kb)

Retrieve 3KO5 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3KO5 from S2C, [Save to disk]

Re-refined 3ko5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3KO5 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ko5] [3ko5_A] [3ko5_B] [3ko5_C] [3ko5_D] [3ko5_E] [3ko5_F]

SWISS-PROT database: [Q8IIS0]

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