OCA Atlas for 3KRD

3KRD

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

FEB, HXD

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, U, K, F, S, W, M, B, O, Y, D, 1, I, Q
L, T, 2, E, V, G, C, J, R, P, X, N, H, Z

Primary reference

Fellutamide B is a potent inhibitor of the Mycobacterium tuberculosis proteasome., Lin G, Li D, Chidawanyika T, Nathan C, Li H, Arch Biochem Biophys. 2010 Sep 15;501(2):214-20. Epub 2010 Jun 15. PMID:20558127

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (971 Kb) [Save to disk]

Biological Unit Coordinates (3krd.pdb1.gz) 962 Kb

LPC: Ligand-Protein Contacts for 3KRD

CSU: Contacts of Structural Units for 3KRD

Structure Factors (1407 Kb)

Retrieve 3KRD in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3KRD from S2C, [Save to disk]

Re-refined 3krd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3KRD in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3krd] [3krd_V] [3krd_W] [3krd_X] [3krd_Y] [3krd_Z] [3krd_1] [3krd_2] [3krd_A] [3krd_B] [3krd_C] [3krd_D] [3krd_E] [3krd_F] [3krd_G] [3krd_H] [3krd_I] [3krd_J] [3krd_K] [3krd_L] [3krd_M] [3krd_N] [3krd_O] [3krd_P] [3krd_Q] [3krd_R] [3krd_S] [3krd_T] [3krd_U] [3krd_i] [3krd_j] [3krd_l] [3krd_m] [3krd_a] [3krd_b] [3krd_c] [3krd_d] [3krd_e] [3krd_f] [3krd_g] [3krd_h] [3krd_k] [3krd_n]

SWISS-PROT database:

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