3KUQ Hydrolase Activator date Nov 27, 2009
title Crystal Structure Of The Dlc1 Rhogap Domain
authors L.Nedyalkova, W.Tempel, Y.Tong, F.Mackenzie, L.Shen, N.Zhong, C.H.Arrowsmith, A.M.Edwards, C.Bountra, J.Weigelt, A.Bochkarev, Structural Genomics Consortium (Sgc)
compound source
Molecule: Rho Gtpase-Activating Protein 7
Chain: A
Fragment: Rho-Gap Domain
Synonym: Rho-Type Gtpase-Activating Protein 7, Deleted In L Cancer 1 Protein, Dlc-1, Star-Related Lipid Transfer Protei Start Domain-Containing Protein 12, Stard12, Hp Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dlc1, Arhgap7, Kiaa1723, Stard12
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21-V2r-Prare2
Expression_system_plasmid: Pet28-Mhl
symmetry Space Group: C 2 2 21
R_factor 0.216 R_Free 0.260
length a length b length c angle alpha angle beta angle gamma
60.577 97.502 92.577 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand UNX enzyme

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (3kuq.pdb1.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 3KUQ
  • CSU: Contacts of Structural Units for 3KUQ
  • Structure Factors (189 Kb)
  • Retrieve 3KUQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KUQ from S2C, [Save to disk]
  • Re-refined 3kuq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KUQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KUQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3KUQ, from MSDmotif at EBI
  • Fold representative 3kuq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kuq_A] [3kuq]
  • SWISS-PROT database: [Q96QB1]
  • Domain organization of [RHG07_HUMAN] by SWISSPFAM
  • Domain found in 3KUQ: [RhoGAP ] by SMART
  • Other resources with information on 3KUQ
  • Community annotation for 3KUQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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