3KXC Transport Protein date Dec 02, 2009
title Mutant Transport Protein
authors D.Kummel, U.Heinemann
compound source
Molecule: Trafficking Protein Particle Complex Subunit 3
Chain: A
Synonym: Bet3, Bet3 Homolog
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petduet-1

Molecule: Trafficking Protein Particle Complex Subunit 6b
Chain: C
Synonym: Tpc6b
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petduet-1
symmetry Space Group: P 21 21 21
R_factor 0.196 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.172 69.265 121.376 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand PLM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • COPII vesicle coating

  • C
  • COPII vesicle coating

  • Primary referenceCharacterization of the self-palmitoylation activity of the transport protein particle component Bet3., Kummel D, Walter J, Heck M, Heinemann U, Veit M, Cell Mol Life Sci. 2010 Apr 6. PMID:20372964
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (3kxc.pdb1.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 3KXC
  • CSU: Contacts of Structural Units for 3KXC
  • Structure Factors (208 Kb)
  • Retrieve 3KXC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KXC from S2C, [Save to disk]
  • Re-refined 3kxc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KXC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KXC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3KXC, from MSDmotif at EBI
  • Fold representative 3kxc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kxc_A] [3kxc] [3kxc_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3KXC
  • Community annotation for 3KXC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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